Scaffold Ga0214923_10015534

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10015534
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7215
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012116	Metagenome	283	Y
F060718	Metagenome / Metatranscriptome	132	N
F090376	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001553412	F012116	AGG	MKALAYLVEEFDAEGKLVRSMLMASEPREMSWFKDLKSKMHNVTITPLIPDTAHIIKVTNVKKYDSSRFVTGL
Ga0214923_1001553416	F090376	AGAAG	MTDVVLKDGTIVDNYSKEYMLYCEAKWLTGKDFEFCQEWFTKISAKRLQDIPTIKGYMVLLNA
Ga0214923_1001553420	F060718	N/A	MIVLNILNWVGLTILKLLIVALLFSAMGFSIIFMYAMQYLTQALHYVDKNVN