Scaffold Ga0214923_10013917

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10013917
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7777
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003112	Metagenome / Metatranscriptome	506	N
F015311	Metagenome / Metatranscriptome	255	Y
F081071	Metagenome / Metatranscriptome	114	Y
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001391710	F015311	N/A	VLYHFTGRNTSGIAQLDLYPRLATAGTISLRVVEKLKCITRTNIVVDFPPATTALDDELRLPHVHQVVLALTHADALERERQYAKAQSVVQTANADLAVMANYELSQVGGIKQITPSSLGDLTTEEITAS
Ga0214923_1001391712	F081071	GAGG	VTAVEFIEASGVPESMWPNFREWFNWHSERGLVGVAKDGDEVAGVAIARCIKGMEVPEPYQHDEDGDSVFVDLTVTSIGGITNALSRKALKCLLSILWDRFGPRRRITFKRNGFYKEYDYYKFMRKALN
Ga0214923_100139174	F086661	AGG	MSKTVVKRLDGSVFVEDDRSLATAKEQNINYARTLASEAIQSAGLDEATQQNAALGIYPPERCEAIKSYIASCWNEYLRCKALILAAQTNDEADSVQFIQPQVPEGI
Ga0214923_100139175	F003112	AGAAGG	MWKTIAIWLTNLSLRFLMTQKEYECFKEALRFAGENNTVAKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES