Scaffold Ga0214923_10012319

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10012319
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8442
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (46.88%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001231914	F049419	N/A	MNKKIDWFNLATTYIFFGIVYGTIVTLCWNYLFEPTFNIHLSILQGFGVHLICRILFGNTNTNYISNFYSQKAPDLDKIDSYLKEFQEQLDKESEEVEKQYQDLDKKD
Ga0214923_1001231918	F044916	N/A	MGRKKVEKSRIEKGLEKEEKTFSLMAKKIVDAIKDEKFLRQFTRDCLEELYKDNPKLFTDHSKLKLIKK
Ga0214923_1001231920	F036564	AGGAG	MKMGRVCLDLNYIVDMDNDEMVKHAVESLYEDLMQGVKYGNISNWIDVIEDKNATPDMIPEFLLEKENE
Ga0214923_1001231921	F032548	N/A	MKNKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFVKEYRNSK
Ga0214923_1001231922	F027756	GAG	MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKMCMKINADWHLVSNIRIIELFSEDEKPKLGFGLTKNEKQAK
Ga0214923_1001231926	F030670	GAG	MKVIRYIKELEDEFGKPLDKWAVYEEKITANGSWAIHLKDAKIVKTFPSPYHARNWMENDGKRTY
Ga0214923_1001231928	F034827	N/A	MKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHAIFMKIRVPNTTSVNILDLDDGKAYDFSNKKRNTINDPDEKQGNKVYKLNAKINIVVL
Ga0214923_1001231929	F048123	GGAG	MKPRYDFNKGKLISYDGEIIEFAGSKMVDKYSDQVEEIMSLFDFKKGEYLVSDESTIGDFEKENINPKKLEKFKKKYGFSLTNRSNISKIAERMYNFRPF
Ga0214923_100123194	F062446	N/A	MIFNPIKFIAFIFIVLAWILMTFFFVGCANSSYHTIPNAMCEDSQNYSTKYNMMDSPDGSKNPNAQAVFLNIKY
Ga0214923_100123199	F016774	GAGG	MPQKKPKIEFLTEHIASLNHWRDQLLILEKSYYSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKPKNKV