NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10012210

Scaffold Ga0214923_10012210


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10012210 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8498
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F014486Metagenome / Metatranscriptome262Y
F022820Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001221011F007359N/AMRQIKLYKQNLGANWVIGIKGSKDKIEQFHNRVYNWGGTNGELQWMADDFAYFWITLEKLERVMFKYVMNGMSDKFGKKFRNRKGGMKEVVMNRVMNTINKIPVENFVRTAQVQDFYTIGQVSAEKLDNDS
Ga0214923_1001221015F022820N/AMKSENRISKILEQKVLKDEDPKLIAEIEKHLAGLEIVWKKWVKAHPNWKEHED
Ga0214923_1001221022F014486N/AMKTLKEILSENEETFYPWSDDENPPLDAGKTFLQKEKEMDEFFEGWRASM
Ga0214923_100122105F010746AGCAGMTYKCAVSGEAIPPERVEALIVLGVPESQWTKKEYSQVRKLRAVYAGDDGSNDIVICDKVEGGSLFESEIIAEVEE

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