Scaffold Ga0214923_10012210

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10012210
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8498
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F014486	Metagenome / Metatranscriptome	262	Y
F022820	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001221011	F007359	N/A	MRQIKLYKQNLGANWVIGIKGSKDKIEQFHNRVYNWGGTNGELQWMADDFAYFWITLEKLERVMFKYVMNGMSDKFGKKFRNRKGGMKEVVMNRVMNTINKIPVENFVRTAQVQDFYTIGQVSAEKLDNDS
Ga0214923_1001221015	F022820	N/A	MKSENRISKILEQKVLKDEDPKLIAEIEKHLAGLEIVWKKWVKAHPNWKEHED
Ga0214923_1001221022	F014486	N/A	MKTLKEILSENEETFYPWSDDENPPLDAGKTFLQKEKEMDEFFEGWRASM
Ga0214923_100122105	F010746	AGCAG	MTYKCAVSGEAIPPERVEALIVLGVPESQWTKKEYSQVRKLRAVYAGDDGSNDIVICDKVEGGSLFESEIIAEVEE