Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10012210 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8498 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (21.74%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007359 | Metagenome / Metatranscriptome | 352 | Y |
F010746 | Metagenome / Metatranscriptome | 299 | Y |
F014486 | Metagenome / Metatranscriptome | 262 | Y |
F022820 | Metagenome / Metatranscriptome | 212 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214923_1001221011 | F007359 | N/A | MRQIKLYKQNLGANWVIGIKGSKDKIEQFHNRVYNWGGTNGELQWMADDFAYFWITLEKLERVMFKYVMNGMSDKFGKKFRNRKGGMKEVVMNRVMNTINKIPVENFVRTAQVQDFYTIGQVSAEKLDNDS |
Ga0214923_1001221015 | F022820 | N/A | MKSENRISKILEQKVLKDEDPKLIAEIEKHLAGLEIVWKKWVKAHPNWKEHED |
Ga0214923_1001221022 | F014486 | N/A | MKTLKEILSENEETFYPWSDDENPPLDAGKTFLQKEKEMDEFFEGWRASM |
Ga0214923_100122105 | F010746 | AGCAG | MTYKCAVSGEAIPPERVEALIVLGVPESQWTKKEYSQVRKLRAVYAGDDGSNDIVICDKVEGGSLFESEIIAEVEE |
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