Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10010370 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10010370 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9527
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (27.59%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9527

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (27.59%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010897	Metagenome / Metatranscriptome	297	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001037014	F022820	N/A	MKHENRISKILEKKVLKDEDPKLIAQIDKYLENLEVVFVKWAKAHPNWKETEE
Ga0214923_1001037017	F007359	AGGA	MKLIKQNLGAHWVIGIKGDKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSLSEKLGKKFRGTKGGLKQVVMNRVLNTINNIPSEHFVKTAQVQDFYSIGEVSAEKLDTDS
Ga0214923_1001037022	F035200	GAGG	MNLRYIVLRDGIRVSEDMHTDLAEAEREAEHWRKIIRTWPDGTKVIIKKIGSEKSEKKA
Ga0214923_1001037024	F016115	GGAG	LKILEESFTSRGFKLQQIKRDGDVAIYKKQLDDGESENHHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDQLQKKLNDYVATAILPSGEKRGRGRPRKNVLTENQNNIE
Ga0214923_1001037025	F020860	N/A	MNITKVKKLAEGGYALYAIDPKTKQETQVGYLGENLDPKGWLPEGVKIENS
Ga0214923_1001037028	F010897	N/A	MPQGVFLKDIRKIDIGNTKLNWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHLYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRRSNIKFGLT
Ga0214923_100103704	F014486	N/A	MKILKEILSENEESFFPWSDNDNPPLDAGKTFLQKEKEIDEFFEGWRASM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10010370

Overview

Ecosystem & Geography

Associated Families

Sequences