Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10010370 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9527 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (27.59%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007359 | Metagenome / Metatranscriptome | 352 | Y |
F010897 | Metagenome / Metatranscriptome | 297 | Y |
F014486 | Metagenome / Metatranscriptome | 262 | Y |
F016115 | Metagenome / Metatranscriptome | 249 | Y |
F020860 | Metagenome / Metatranscriptome | 221 | N |
F022820 | Metagenome / Metatranscriptome | 212 | Y |
F035200 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214923_1001037014 | F022820 | N/A | MKHENRISKILEKKVLKDEDPKLIAQIDKYLENLEVVFVKWAKAHPNWKETEE |
Ga0214923_1001037017 | F007359 | AGGA | MKLIKQNLGAHWVIGIKGDKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSLSEKLGKKFRGTKGGLKQVVMNRVLNTINNIPSEHFVKTAQVQDFYSIGEVSAEKLDTDS |
Ga0214923_1001037022 | F035200 | GAGG | MNLRYIVLRDGIRVSEDMHTDLAEAEREAEHWRKIIRTWPDGTKVIIKKIGSEKSEKKA |
Ga0214923_1001037024 | F016115 | GGAG | LKILEESFTSRGFKLQQIKRDGDVAIYKKQLDDGESENHHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDQLQKKLNDYVATAILPSGEKRGRGRPRKNVLTENQNNIE |
Ga0214923_1001037025 | F020860 | N/A | MNITKVKKLAEGGYALYAIDPKTKQETQVGYLGENLDPKGWLPEGVKIENS |
Ga0214923_1001037028 | F010897 | N/A | MPQGVFLKDIRKIDIGNTKLNWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHLYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRRSNIKFGLT |
Ga0214923_100103704 | F014486 | N/A | MKILKEILSENEESFFPWSDNDNPPLDAGKTFLQKEKEIDEFFEGWRASM |
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