NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10010370

Scaffold Ga0214923_10010370


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10010370 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9527
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (27.59%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010897Metagenome / Metatranscriptome297Y
F014486Metagenome / Metatranscriptome262Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001037014F022820N/AMKHENRISKILEKKVLKDEDPKLIAQIDKYLENLEVVFVKWAKAHPNWKETEE
Ga0214923_1001037017F007359AGGAMKLIKQNLGAHWVIGIKGDKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSLSEKLGKKFRGTKGGLKQVVMNRVLNTINNIPSEHFVKTAQVQDFYSIGEVSAEKLDTDS
Ga0214923_1001037022F035200GAGGMNLRYIVLRDGIRVSEDMHTDLAEAEREAEHWRKIIRTWPDGTKVIIKKIGSEKSEKKA
Ga0214923_1001037024F016115GGAGLKILEESFTSRGFKLQQIKRDGDVAIYKKQLDDGESENHHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDQLQKKLNDYVATAILPSGEKRGRGRPRKNVLTENQNNIE
Ga0214923_1001037025F020860N/AMNITKVKKLAEGGYALYAIDPKTKQETQVGYLGENLDPKGWLPEGVKIENS
Ga0214923_1001037028F010897N/AMPQGVFLKDIRKIDIGNTKLNWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHLYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRRSNIKFGLT
Ga0214923_100103704F014486N/AMKILKEILSENEESFFPWSDNDNPPLDAGKTFLQKEKEIDEFFEGWRASM

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