NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10009296

Scaffold Ga0214923_10009296


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10009296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10261
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F039478Metagenome / Metatranscriptome163Y
F050171Metagenome / Metatranscriptome145Y
F071967Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000929611F039478N/AMKIIKILNFIDEILKEQKEQPILGTLYKIKGEDFPFRYIRFTNDFLSNKPVYHFKHHQLKEYKFNDLSKIERKANLEEIRIYNLIKDHVNEVANN
Ga0214923_1000929618F050171N/AMGMFNYIKVEQDLPLNDELKALNIDFKKEEFQTKDLEPNIMVTYIIRDYKLFELKVNGHWEDNPDYVAGNGRFREFFDKNKWVKDGEEEVFRDDFTGTIIFGCYIRGKQIFDNDLFPDWKCVIVKGLVAEMSLITPIHRHSSKDRIEADLKFQVDLEKHERKMRCPVYSFYFKYYVKTMNLIEWKLCKGINLIIRFLNWLQWKGIRKIIRLLSPR
Ga0214923_100092963F017268N/AVNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQEKLVKDINDKTFSDFITLRKEMELEGRKHQQEIADLALKISTTYVTKESFDDYFDRIEQKLDRNFDIIQQHLINKK
Ga0214923_100092967F071967N/AVSNQSEALAICSEFADEYGIDSKDNDKIIVYMKSEYINELKKMLENKNYKLKKFQVYGDEAIVYFIPSKK
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