Scaffold Ga0214923_10007691

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10007691
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11685
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F081071	Metagenome / Metatranscriptome	114	Y
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000769111	F000635	GAGG	VTLSEIAQYAGEKVGKTDSDTLVFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTDRTITLGTNVETPLSISYDQAEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTISLRVVEKLKCLTRTNIVVDFPPATTALDDELRLPHVHQVVLALTHADALERERQYAKAQSVVQTANADLAVMANYELSQVGGIKQITPSSLGDLTTEEITAS
Ga0214923_1000769113	F081071	GAGG	VTAVEFIEASGVPESMWPNFREWFDWHSERGLVGVAKDGNEVAGVAIARCIKGMEVPEPYQHDEDGESVFVDLTVTSIGGITNALSRKALKCLLSILWDRFGPRRRITFKRNGFYKEYDYYKFMRKALN
Ga0214923_100076915	F086661	N/A	MPSNIIWNIDSTSFVKVDNRTRKEANTECVEILRKETTKCLDAVGIDSTTQQNVALGIYPSERCEAIKSYITACRNEYLRCKALILAAQTNDEADAVQYVAPSVPEGM