NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10007434

Scaffold Ga0214923_10007434


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10007434 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11945
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F005092Metagenome / Metatranscriptome412Y
F014496Metagenome / Metatranscriptome262Y
F016958Metagenome / Metatranscriptome243Y
F026861Metagenome / Metatranscriptome196Y
F063623Metagenome / Metatranscriptome129Y
F081257Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000743415F005092AGGAMDKLEYALRTISNCNLCEGKGVNYWSNGEDYDFEDCICNPYGIILDDDGDVIWDNGLISEPELFTTMEAN
Ga0214923_1000743417F000808GAGGMDYTYAITTSYDGELVNTLRVSDMLDAVNVWDKCVDYGDAKEYATYNLSDPTGKMYTKTFYRNGEVSTK
Ga0214923_100074343F016958GAGMKVTITSMSGNTSTMELPTKENVYYFIDLYKKSLKKNQRVKITCDILGIDGYLQGTAPIR
Ga0214923_1000743431F063623AGGAMQIRNDMLLTPQIKKAIELGTSGLDVMHGELKVLLLEAEVHLEEAQRVEEETDYSDAMDSMERKYWEGQVDALAYLYSLTYQLSFAIEERENRD
Ga0214923_100074345F081257AGGMLTLNYTAEKDNSIVSVSNRLMVSEYQINDLLDSLVSNGYTILSTEIGDGDYSQHWNG
Ga0214923_100074348F014496AGGMKTYSIPDLLVGQTYYPRSLARKYQYGEITFAEKREDIWLDGYDAYAIRFNGNRWATVAVKVAD
Ga0214923_100074349F026861AGGTGGMKLDEYKKLVESQREKTRLTNLEKIATIVNNKTEKEKN
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Institute for Fundamental Biomedical Research
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