Scaffold Ga0214923_10007320

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10007320
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12071
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (51.16%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F048123	Metagenome / Metatranscriptome	148	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000732016	F096610	N/A	MAIRPKTYFVKMTDNTDGTFTISETKVLDKVNQHARHWRSFDKRKLTSKLRNSVLVTK
Ga0214923_1000732025	F036564	GAGG	MKMGRVCLDLNYIVDMDNEEMVKRAYECLYEDLMQGVKYGNIGNWIDVIEDKNAKEDMIPEFLLEKENE
Ga0214923_1000732027	F032548	N/A	MKKKQNKEMEKAIKLLSELVDQADEDCPHDCRTIHFTNILEEASEFVKEYKNSK
Ga0214923_1000732028	F027756	GAGG	MKLENLVDRKILYLNYPINKFAIQEGKVSEISPAKKCIKINSDWHLIDNIRIIELFGENERPKLGFGLPKNEKEAK
Ga0214923_1000732033	F030670	AGG	VNKVIRYIKELEDEFGKSLDKWAVYEEQITSRGHWVFKDAKIVKTFPTPHHARNWMEYDGKRTD
Ga0214923_1000732035	F034827	N/A	MKYTITARDKEAMVDFDLIKEGEIFSFFDPESVKRGNHAVYLKIKNGTNNIVDLDDGKVFNFSDKKRNTLNDPDEEQGNKVYKLNAKINIIV
Ga0214923_1000732036	F048123	GGAG	MKPRYDFNKGKLISYDGEIIEFAGSAVVDKYSDQVEEIMGLFDFKKGEYLVTDESTIGDFEKENINPKKLEKFKKKYGFSLTNKTNISKIAERMYNFRPF
Ga0214923_1000732042	F024040	N/A	MNIYVTGYNWSAKVDIDTKKLDKADWYSEACTRAVESVLDQEEKEGVELKIDDYDNFGLGVILLTWDEKNIKNEDEHRVLLTSNVLANAGRWEEYNEVKAYEDKCKEEGL
Ga0214923_100073205	F026210	GGAG	MSPILGANPLDYDAKYPQTADAHTNDDAKMFVMERNIDKQVMFQTEDGTQFYGKIAGVPNSEHYRVIVNRTDTPWEWYVREEAVHFIIDPLVKNNIL