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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023179 Open in IMG/M |
| Scaffold ID | Ga0214923_10006068 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13737 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F007467 | Metagenome / Metatranscriptome | 350 | Y |
| F074558 | Metagenome / Metatranscriptome | 119 | Y |
| F085343 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214923_1000606810 | F085343 | GAG | MKTITTTVLMAMLMASVMAGEDEEMDDFIGGVYRGGGNVHRAGSVIMTQDGLIFKSGSRFIYQDGRECQHVGSTYIREDNSIVVRAGNAFVSNEGLTEKVGSCYIGPVNSFTAGSTTVRQGWASR |
| Ga0214923_1000606813 | F074558 | GGA | MALDPNDPLIPMPWQMDSIRAYRASKAMKAEEDALRLEELRQRVAKGKEEEEMSTPIGRAGRAADIAAFLEQEKQKESGIPIGEEIGARMTAKGGPSILEATKMQGQLDVEARARQARVDAAKNYLAGEKSLLPIASVDVGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVAATYEAEGFDRDTAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYSNEQAEKMWRDPRTPKAIKDQLNNFFGQSEEPKAQSWIKSRLGR |
| Ga0214923_1000606816 | F002149 | AGAAG | MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVRDEEGIAGVALARCIKDGQEPKHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLAERFGPRKRITFNRSGKPRSYDYMTFMRKARV |
| Ga0214923_100060688 | F007467 | N/A | VTEKEAWARFEAGLKDAQSFDEAVAWVKKNKKIVEKLTMMAMIRKFNDDISKANRTWRN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |