Scaffold Ga0214923_10005980

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10005980
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13869
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.18%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F003542	Metagenome / Metatranscriptome	480	Y
F005090	Metagenome / Metatranscriptome	412	N
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011075	Metagenome / Metatranscriptome	295	Y
F011392	Metagenome / Metatranscriptome	291	Y
F070108	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000598010	F070108	N/A	MVFSLEEQMDIELILTEASAYGMSAEVELYAQKYLSEGCTPVEAYQHAYNEWIK
Ga0214923_1000598013	F002303	N/A	MDIREQCYERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIYLLAMCKANCFLNEF
Ga0214923_1000598015	F007751	N/A	MNQILELKSVIGKDVSENRSPTCRARLVSVGKSNCIFQSVPSLYGPPPKPEFVGVKYKVPNWIAWNSFFF
Ga0214923_1000598016	F010836	N/A	MSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELKDNSDYVDYGKTDPNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKLKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL
Ga0214923_1000598018	F011075	N/A	MRSFETHLGIIVGSHLNDAMIEISINPKLAKQRMKFVKALTFFNEDLTKGVTDEYCSWLWDELFENQRWGGPYVKGTDYETK
Ga0214923_100059802	F005630	N/A	MSKNLYEVDGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGINSIDELYDFVIN
Ga0214923_100059803	F005090	N/A	MKKKMKFVWCGVNFELPAECLRTTDYWGKKLDNPYIYIGRKECPAIAKQFMKAKYPKLLVWGSSQTFANGNSASVDVCNADGSDLDMGSKEWNEINSFIRQMCGGKYDGWSESYEYGEPGKTDNGTKLDFGTKYLSVNNKAPFGTWPDVVRMLKGMMAGEYVWGPLSLEKAIDKVRDYKVTEPTIKKALELI
Ga0214923_100059804	F011392	N/A	MNLSIKELNELIYSLGITASKGIFVNKELNASLIDKLYSELNSKIAEEAIDEEVESDTYYVSNEEADEDAKQRDYSAFNDYASTLKQDAQRYEASHMTTSFPIVDPFTSVSEDYDNHLSKLKQRGYITQALLDYVDKKGAVSHGELETYYKIITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYSDAKYVIKVANPSNWVVSDYDYKTFNEAPYGE
Ga0214923_100059805	F003542	N/A	MNTMLKNVKNPVQFDYDLFDSKIGYDSVNKKYLIRVYDYLVDSIQNDVKPTWTSIMVKMLGDNPNRCNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSDESWNWFIMRTGSCEYSTIIK