Scaffold Ga0214923_10005296

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10005296
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15088
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F015434	Metagenome / Metatranscriptome	254	Y
F017131	Metagenome	242	Y
F024955	Metagenome	203	Y
F034574	Metagenome / Metatranscriptome	174	Y
F038086	Metagenome	166	N
F048773	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000529612	F017131	AGGAGG	MAFPGSYNFNYYRGDTAEFVIRPKTANGSAFDLTGFSADFFIATARGETGTQYEAQAVVDAGADTVTCTILPGVGRDLNAGTYVYDVQIDSGASEIYTILTGTITVTDDITGAV
Ga0214923_1000529613	F010302	GGAG	VVDVLLNTEDVVVLGPPETVDVLVDIGPQGTRGTKFIVGSGEPNPQTSSGVLLGQTLILNDMYINTSPGEDYGYLYQYVSQPGGNTWVEVLKISPTIYSAIETVSFASGNGSITIPIANIVTVTGSPLTASNFNVQYQIEGANPIASSLEIPALAGAGTNLVINLHASQYSGGSWSALSGSKTVHLFISIV
Ga0214923_1000529614	F024955	GAGG	MAVENIGDLVPTKIPALIDDANIQDALRAYHYGSYDFDTAETDPEELLNPSIAYTINDLQNQIDDNADLEEAARDISRASTSAPTAAAFTAFSATIPDGYIWLDKDSSAGVGYYAATSVYTTTAPTTNLANGLIWIEKGSNPLTMYVWNADTSAWDEIGA
Ga0214923_1000529615	F048773	AGG	MPTTFDSDGKAAYVYNLADDTWYQVSGKTDISGTFEWTGLHTHLSNFTTAEASVAKKGTNNFLNPAARDAAIPSPIAGTVCLIRQNAGGNTVNEIQVYIGGSWVTVLPSPIGQTNKVLKSDGTISSWADAPDAMTQVILMMGV
Ga0214923_100052962	F034574	AGGAG	MKITYSIWQGSLQKGTLTANSIKDIVKTIDELNSINPPIKFEYLVHKIEQVA
Ga0214923_1000529622	F038086	AGGAG	MATTTISNISNTINIEDIQSTKSLTNIKPFDSTISNIAFGALIAATTLANPSTIVDLKPTISNVVKVDYAKVITPTSVLPFRLTLSNIGIEGYDPANPPGIGIQIIGFSNYIL
Ga0214923_100052964	F015434	GGAGG	MESNYPDSWHRHTPKGMTIINTVNKSKKCCDSCSCNEEQEDFNKLMETQTSFEE