Scaffold Ga0214923_10004728

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10004728
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16268
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F018702	Metagenome / Metatranscriptome	233	Y
F023107	Metagenome / Metatranscriptome	211	Y
F037064	Metagenome / Metatranscriptome	168	N
F041011	Metagenome / Metatranscriptome	160	N
F043392	Metagenome / Metatranscriptome	156	N
F065437	Metagenome / Metatranscriptome	127	Y
F071220	Metagenome / Metatranscriptome	122	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000472810	F091353	AGAAGG	MIKTSVDLFDEVCNAVSKGDLDKQLVPLKKLVEERLSATKVVADIKDFVVGDRVILNSNCGTKSLIGEEATVVEIRRSKISIIFDKPKGRFARTNSKGEIYSANAVVPISIVDKI
Ga0214923_1000472812	F023107	GAG	MDNILPSRTVMFVGDYFTLMTTISLDEKLRNEGEVDNDFAVRVASVFMKEYYGFDVASVANSIGVVDEEGVEV
Ga0214923_1000472817	F071220	AGGA	MTNNVKGVVDTVVAVRTTTTTIKNDTKVIALDETNAKELLAKFEANKADKATLEAQYKELQAQIYSLLGYKKVGDKWIGVVEEGTIDGVSVIKVGTQTRTNFDKEKFLQENPELLPLVEAFTSQSTNTILKTTR
Ga0214923_100047282	F018702	AGGGGG	MKTKAKYIRRRVVVALVLVGLIVWANNATTPDMCKVPTEQMNQFCIDLLYP
Ga0214923_1000472821	F041011	AGG	MHTCQIMLVEADSADEALSYVKSTITYAETPYPAWSDWHGGLGEGLAGRWSGLFLGWEENQDVLCYTENKILADDIIKQFLSYRTTEVKNLWDEMKKGNGFDVEKSISEYNPYEQRFDDSGMNMWRLQRISKILNNDWCSDTGVYDLQEHTANLEYFKNRLDKNPEKQYLVPVDFHF
Ga0214923_1000472822	F037064	N/A	MERDESKFVIKYASHMLPSLAAGITRHDACFYAGEGHIATVLYEGFGVDIYCDGDTKIYNRSTDQYYTGGADLILGGFDTDAKFHKATEDESLVMDMNSWFDLYCYGEHFDMTSHMLNEAIDMAKDYVYAEYFNAETLLSMPDMLDK
Ga0214923_1000472828	F065437	AGGGGG	MKDDIQERWNEGYYSVLNGAKIIRFLGTVPEEFGGNGFPQFLVKLSTGEIIEMEVSKDPEGNGGGFLFGLPNFTLPEFRENSIRRKNA
Ga0214923_100047286	F005558	AGGGGG	METNERSMSWGELAELTHFTQVEEFGFCTCEDNEGKENPYSDCPKG
Ga0214923_100047289	F043392	AGG	MEIVDKYYHSNGSAVPFIAALVDDPADGDTKIVIMFDERDFTAVLSLDSLLRDEDISARNNGYHGDKYEKLREDLWDGF