Scaffold Ga0214923_10004613

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10004613
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16519
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004306	Metagenome / Metatranscriptome	444	Y
F009960	Metagenome	310	Y
F011935	Metagenome / Metatranscriptome	285	Y
F025742	Metagenome / Metatranscriptome	200	N
F038092	Metagenome	166	Y
F039484	Metagenome	163	N
F050949	Metagenome	144	N
F055733	Metagenome / Metatranscriptome	138	Y
F063369	Metagenome / Metatranscriptome	129	Y
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100046131	F009960	GAG	MLTIENINKINGYSLEVKGKGYYFKGWDNTTSDVANFTLAGVSASNPLIKITLHKKGRMVFDDIQKSKGCYVYGVAVDGLLFHYTKERLNTPAKFRNEIEQILNAIAC
Ga0214923_1000461310	F025742	N/A	MLTIKNEDKLTGTALTGAGPDGPIAWHVSGMGGSLHHYIIYLTRDDNGWERKVTLDRYHSVNQTGKQYKLECGTNHMHLYKTSMDKIEIFTNYLEYFI
Ga0214923_1000461311	F039484	GAGG	MILKNPDKLLKQWIPATTGDIWFVDDVSVTMDSHGTAYIFRCITELPVKTSPNQQYYNSTRRIHKEVKLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTNNL
Ga0214923_1000461314	F055733	N/A	MAPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED
Ga0214923_1000461320	F004306	N/A	MSLAQRELGSTFRKDNETNMSNKHIEIIRFDNAKIHIKEYLNGEQLPNTSTYQPAILKMTGARLLIINPDNKEEYYDCRYDDCIIKRLNG
Ga0214923_1000461327	F063369	N/A	MIVTITFSIIAFMLGVQLVIKFTTNELDRPYRIIRRQYYDVGKLKNEYYVVEKQKQFLFIKYWSGVACEDSWDTTNVPSFQNFDEAYTLLQKCKQQKPLNGFKDEVEVEWTKYPMKIN
Ga0214923_1000461331	F011935	N/A	MIKEIQNFDKVYGEQIYPADGMVYTIEKANVIKTNSEPELLEYIAVKLLDMYNNHRPAEYSVAIFADNKNQHNIACVYKKGEQSSIFTDKFMSSVHFKNKEFFKTYVVTLINQALNH
Ga0214923_100046134	F050949	AGG	MLTIKNIGRLISDSFYDKMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKLKTYIPIETISDKRLLIKRMTEMIDNSYDI
Ga0214923_100046137	F103248	N/A	MLTIQNIDKIINITSPLPYKWHISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYRLYKNFDHSKINRWLSLHQISPYFIKQAIDKMLNE
Ga0214923_100046139	F038092	N/A	MPHIPIPPKPTMTTQQMIQQLQRINTMPQQQINTITKAVLDAQDIRDIAEAQAKATMIELMKQETELKKQTFLTIENIDKIRGHKYSEWLEVGGVKEWDNHYEFTLLDEKGTQVETIILHRKQTSDKRYIMEYNNQTLWVTKDRLSTIDGVIECMQEI