Scaffold Ga0214923_10004088

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10004088
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17910
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011584	Metagenome / Metatranscriptome	289	Y
F013870	Metagenome / Metatranscriptome	267	Y
F065558	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000408818	F013870	AGGA	MSNEFKKECGPGMYWCNTDKVCKPLEEDAAIVPANSVGTGAVAGIGVGRQGEPGVQKKKVASFISYMRRKAPQ
Ga0214923_1000408828	F065558	AGG	VKSFKTFITEEKKATITKKESYRGRTTADVEYNVHDENGRHIRTTKTKKEAKMWKDMHELSKEEMHKKYPELRPK
Ga0214923_100040886	F011584	AGAAG	MPCLRRLIVSEYIITFLAVFFLDVFYTYFLQAVYNEQVLRASIWSGIVYLVACIAVINYTVNNWLLIPAAIGAFCGTYVGMILRKRKLIK