Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10003475 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10003475 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19746
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (65.52%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19746

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (65.52%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056554	Metagenome / Metatranscriptome	137	Y
F070923	Metagenome	122	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000347521	F098561	AGGA	MAITLGKDCTISLDGGTILSARNVTLTESARTIDVNPYGSRYAGVYSTGYECTVSVELNDSADLGTAFLQMHTGGTFNVVGGAGGFSFLAVLTGISESDPIDGVATFVLEGKMTDPNLQR
Ga0214923_1000347522	F056554	AGGA	MAITLGKDAATHSAPFGTGIISATYTQECETVDISNRANIGGSSGAPGHKVAKAGFTTKTWEIECHDPTGLITSLEAAGSGFSVMSVTENIGIDGAITFTVSAKEFS
Ga0214923_1000347525	F090310	GAGG	MSSTLRGIADALAAGLQSVTWDISSTVVERKNWANLDVEAMSVPHVYVVPGNADVTRISRQMMQVDYTVTVFVGRHVTTDSDVDAMLDLADSVMLHVRAHDFGSTVIWPAGVTSPQTVGIDLNPDDALTERNVWRAVITATYRVFESNVLPTV
Ga0214923_100034754	F102439	N/A	MGDVQRSLLGDDELPPPKGKRRRMPERLSPQLRKWLTQLARVGARITWTIELLYDPTKGGQGELCDRAKAGDHTLVLDTVREVEHRAASLADDIEVFMTPPDRLPSEPGSKARVEAMALRQLAKMHLFDG
Ga0214923_100034755	F070923	GGAGG	VGDAPAGMLPHLRSRLRAEVGPRAVAAGRAFDEFVDAVCRCWNAEHWTKLARSQPESEMAAVKDAKVLIAKVREDVEFMWGDSPELKQLYGDVGTEAVEAFARLWFESMSNRTWMRAACREARKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10003475

Overview

Ecosystem & Geography

Associated Families

Sequences