Scaffold Ga0214923_10002754

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10002754
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22839
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F025458	Metagenome / Metatranscriptome	201	Y
F039992	Metagenome / Metatranscriptome	162	N
F081071	Metagenome / Metatranscriptome	114	Y
F088506	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000275413	F001459	AGG	MGGKAMRKLKAALAFIRDQEWVEEPKWLEEDEKALTAFLGTPTGKRLSLILLNLTLRQNASAVMKKPEGLADACGYAKGFRGCVATLESLATTKLNSAIAGYGDGEDEPVAN
Ga0214923_1000275417	F004760	AGGAG	MPVYQYEDTRNGNVVELEKAVAERDKVPRYLKRFQVPARLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRKQNG
Ga0214923_1000275422	F025458	N/A	MGHKILHHYLDGTSFFEDTRTIEEAHEENLTRIRELVTAKILEAGYDEVWQRNAALGVLTNIEVEQGREFIANLRSAYHDYKSRLLESTRDEADGIKFNMP
Ga0214923_1000275423	F003112	N/A	MIKSLATWLTNLSLRFLMTRSEYACFKEALKFATENNTMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEIVDAVVHLAVALKYLEGRGRES
Ga0214923_1000275424	F039992	GGAGG	VSLDEVSDLKDRVATVSERLARMEERQMTLISMIERSLSSFGDLSNRVTAIEGLKTKMLLVAGALGAIISVAWDFVKSKLINGG
Ga0214923_1000275428	F000635	GGAGG	MTLSEIAQYAGEKVGKTDSDTLLFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGSNVETPLSVSYDKSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPSTEALNDELRLPHVHQVILALTHADALERERQYAKAQAVVQSANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA
Ga0214923_1000275430	F081071	GAGG	MTPMDYIELSGVPESKWPTFKEWFGWHEKLDLVGVAKDGDTIAGVAIARCLNDGQDPVHYKHTEDGDNVFVDLTVTSTDGISNALSRKALKCLLSILWDRFGPRRRIMFKRNGAYKEYDYLKFMTKAMA
Ga0214923_1000275433	F088506	AGGA	MAMFNFQLDGEKQARKPMRSYIDIDESGRPKARIYADEYDDVKANPDFQPFISNAGKNIAMAQDNDAYQMNEARIADVEKRIDLKRQQTIKAETEARKAQEENNVYYGPDFLGSLGGLRQTYAEKKTARQQELKKLLEERSGYMETPEISAPMQAEAPTEQAPAEQTQAAQNEYINLKAPDGSMSRIKKSAWSGQSKTKPGKKVSEVYLDSGYSIIP