NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10002682

Scaffold Ga0214923_10002682


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10002682 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23294
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (24.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F039478Metagenome / Metatranscriptome163Y
F083776Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000268237F039478N/AMNWIKILNFIDGILQEEKEQPTLGTLYKIQGEDLPFRYIRFTNDFLSNKPIYHFKHHQLKEYKFNDLSKIERKANQKEINIYNNIKDHVNEIAKTFKS
Ga0214923_100026827F017268N/AVNLDISMIFNLVMGGASFLGGWLFTRLFSLFDKQENLMKEINDKTFSDFITLRKEMEVESRKHQQEISDLALKISTTYVTKESFEAYFDRIEAKLDRNFDIIQNHLNRK
Ga0214923_100026828F083776N/AVIVSDRDIDFFAKKLGLSAEKTFLLIQDPQCLPEILNKISEESVDGIVDISFPVFAEITIIKYSKDLKYSFEEKEYVSEAVGLKFYDLIGEPIIKKSILEFKHDEDTAKSLLVFLGFFYKNLNKARRAYPSEKIYYNIAKNGFQNSDKIQVSEHLQDWIKVLRIIHNEVWF
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