Scaffold Ga0214923_10002115

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10002115
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27020
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (5.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F011667	Metagenome / Metatranscriptome	288	Y
F012573	Metagenome / Metatranscriptome	279	Y
F019827	Metagenome / Metatranscriptome	227	Y
F028170	Metagenome / Metatranscriptome	192	Y
F100414	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000211517	F100414	N/A	MKEYFCTYCGQSTYDVDVDYLVGFDHLSCVLNDVPKEKKMNKKKPMEIKNWTKLNSQKFDVMGASFVIMDTRIDNNDTGNIYSAWVYPYNDSEAFLRVTLFSNDMQLQIKVLPPGQFTIPPMDLTTTITKVHLSNPSIFIQTIAEGLLDDPTVRNIIEFIGRKQDIRPRVKPANPAGTYGFPTSSTNLW
Ga0214923_1000211521	F028170	N/A	MALKKLMKGLEASLKKESEVHPKTWLGELFHKFKIRSIENRIIDIKAELYNRKTKK
Ga0214923_1000211525	F003626	N/A	MKEWIAKYQKAIVGTGAVAVLIVCYLQQKELSSLRSERDELTKHMVDSHAMAGGDIGKANLMDSLHDELFNANVQNGRYELSLQHLYEVNPKAAKEFDDYMAHETE
Ga0214923_1000211533	F019827	N/A	MYSNDNILRGTKRKAYSASKVRKMRSEHMLTRAKKEGVTNDQVQHYLGKLQAAGHMRLGGMRSFDTKIDTDVFSDGKAIKATTIKFDAILEKGMGEKPHMTGYLTSANDSDKQYKLKGWFNEDGTFRIELVN
Ga0214923_1000211535	F012573	N/A	MSKQTDNWMEKLAKSYKLPTEQPVVNKDKVSLLKESQLKIIMGRDKKYLVNKK
Ga0214923_1000211541	F011667	N/A	MNVENKIKDILELLEDAIAFEDFKRVDEARKELTFLYEEIQSTFPLDGWDDNDVD