NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10002080

Scaffold Ga0214923_10002080


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10002080 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27289
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (29.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F024040Metagenome / Metatranscriptome207Y
F039497Metagenome / Metatranscriptome163N
F071967Metagenome / Metatranscriptome121Y
F083776Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100020802F024040GAGGMNIYVSGHNWFAKVNLESSVKKSDWYSEACTRAIESVLDQEEKQGVELKINDYDDFGLGVILLTYDEKNIKNEGEHRVILTSNILANAGRWKEYKEVRNYEEKCKEEGL
Ga0214923_1000208021F071967N/AMSNQSEALAICSEFAEEYGIDIEDENSVVVYLKSEYVNELRTMLERKNYKLKSFKVYGDEALVNFIPKK
Ga0214923_1000208034F017268N/AVNLDITLLFNIVLGALSFLGGWLFTRVFSISDRQERLIKDLNDKTFSDFISLRKEVELESRKHQQEIADLALKVSTTYVTKESFEAYFDRIEAKLDRNFEIIQQYLINKK
Ga0214923_1000208045F083776N/AVKVCERDIDFFAKKLNLSPEKTFLLIQDQDCLPEILNKVSEEDVTGIIDISFPVFAELTIIKYSKDLKYSFEEKEYVSEAVSSKFYDLIETPLQNKYFFTLDHDEDTAKSVLVFLGFFYKSLEKLRRSYPSQNIYYNIAKSGFENSNKEEISYHLKDWIKVLRRIHNEVWY
Ga0214923_100020808F039497N/AMSEENFNCQAGNQLRQVLYKDILRYAHESDMTAYQVIGVLESLKFDLLNAMVESGKDNEDEI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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