Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10002039 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10002039 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27640
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (81.13%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27640

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (81.13%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F012658	Metagenome / Metatranscriptome	278	Y
F043359	Metagenome / Metatranscriptome	156	Y
F059898	Metagenome / Metatranscriptome	133	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000203921	F000325	GGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSSCAFLGAGCYAEQTEKMYPNVRPAGMQNVITEKGRIRAMILDAMRQGKSIRWHERGDWFLNGELDLDYLANVTWACESILSEGKELPDMWFYTHIYDDRLVSLEKYMNVYASIHNDTDMGEAMSQGFKKFAWCDSDQKIAPKRPKRKAAADAWRKSLPKLVVLNGTKFITCPEIRRGRGVVTCTPTKGSVTCDLCVKGLANVLFPSH
Ga0214923_1000203925	F012658	N/A	MKNKEKEMTNSLDKILAAMRTGKYGSVVDTKGKVHVGIINGLIREDGSGNNWLVDITYQTKNERIFIHAK
Ga0214923_1000203934	F089832	GAGG	MPKYYIRCGSLELIYSTNKSPMDAAIATLWETNEHDVLDEYFYIDERGMKNHLSALPDTTVIKSEIILKKAGWEIG
Ga0214923_1000203939	F043359	AGG	MEWFNSHKNPPEVGQKVYYFGPNIGIGIGYYSYHPDRKMETYYYNENNEKVVDKEIEICQHVFTNQSKPWTCDACDAPYWLPYDEERAKSWCPIIPEQYTKDLYD
Ga0214923_1000203940	F059898	AGGA	MTDDREKAMIYILSFFKNKMAAANKYNIDRAKELIFTHEIALPELVDKYVELTWKNA
Ga0214923_1000203941	F012108	AGGA	MINISLTVREAMWIISKIESYDTIYDKIVAAFQDATHENRHKTVTITGGMTFDNRIPCIKAIRLNTGWGLKESKEWTDVLVGKWDDAGRRLKGASRHSMTLKTPEAAENLLRDLIALGCEGYLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10002039

Overview

Ecosystem & Geography

Associated Families

Sequences