Scaffold Ga0214923_10001992

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001992
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28023
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F014968	Metagenome	258	Y
F019997	Metagenome / Metatranscriptome	226	Y
F089937	Metagenome / Metatranscriptome	108	N
F091303	Metagenome / Metatranscriptome	107	N
F093195	Metagenome / Metatranscriptome	106	N
F093225	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000199218	F012098	AGG	MPKVHKVGPKHFIQLTNFPFKWGFKFFVRGWTQEIEHPFRTSTPFIVRLPRYKALVFGKWTGTKNEEEALTMALGKREVTYDDFTEEAGWTPAPDSDREAGGNNRYSRFDFMDGAIDVYDWKTHYDLAKTTE
Ga0214923_1000199223	F093195	AGGCGG	MAGAIDKSHQSYNDFNSGVESKQAPLSAIDKKMLDFAIRTSRNPTIKTHGQILRNFGMYPPEFWTRAQNLSDHPEVDPQSKEQLSRIFSEPSRPGPMTGGAPIDVYGKQFSHGVEW
Ga0214923_1000199225	F093225	AGG	MTNNMILTIFATVGVITAALLGIRQLLEPYKKKFENVISWFEDFKRDWSGEEESPGRDRTPGVMERLNRLDGELSSNGGKSTKDIVNKLYDNQGILMEAFVEMGERLINIEESLTVNKSKESV
Ga0214923_1000199226	F019997	AGGAG	MDKKTLEAAAGTYLRAAAAAVAALYMSGITDPKTLANAFIAGLLGPLAKALNPKDPSYGFGAKK
Ga0214923_1000199229	F091303	GGAGG	MAQLNRKPLTVNPNRRTRKQEFNFNSNLGFKSKANPSVVSWASRGKGVQGESVNSQNNASKLIINRNWKPL
Ga0214923_1000199238	F014968	AGG	VIVTLSKEEVRACADIALNRWMMKWGSVDRPNYAGDNKRFLEPEISANVRTIVAEYAVAKLYKQPFVFPFYTNDEHYFRKDFPDVMPVYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEIEVYGWLPTEECTKDEYHYAPENSWRIPLDKFNDTIPG
Ga0214923_100019929	F089937	GGAGG	VATISSLADRLRSEIGDFPKSFVYTFTTDGTTNRFLVPYSPLDGANLIVNKNGSDISADVEVEEATGYLVFDNVPANGDDIIVAGNYFRYFTTAEVQTYISTAFLEHSAFHTDAYGRSVSLQNLPTLEEYPVIIYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIEARKQQYKELCSQLGIGLFKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVPIVTQDLFVYEGDAYEFTIVLDFEVDTYTAKSEILGVGIPGVITSFTITYPNVGTADGAGLRTLKLALTGTQTRMLPSTSYYDVQLTKDGVTHTYVRGKIFKTEEVTEV