Scaffold Ga0214923_10001961

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001961
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28308
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (60.56%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F035281	Metagenome / Metatranscriptome	172	Y
F040587	Metagenome	161	Y
F041150	Metagenome / Metatranscriptome	160	Y
F043359	Metagenome / Metatranscriptome	156	Y
F056376	Metagenome / Metatranscriptome	137	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000196111	F000325	AGGAG	MKTANGNDKLGKENCIVVSRPVGDTCPSDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRAMLVDAVKKNKDVRWHERGDFFKYGELDHEYVDNVLWACESILVDGGSLPTMWAYTHIYDSRLSTELGKYINMYASIHDGEDMKQAKEAGFKLFAWCDSDTKIAPKRPRGKVKVTAWRASLPKLVVLEGEKFITCPEIRRGRGVVTCTKTKNSVHCDLCVRGLANVLFPSH
Ga0214923_1000196114	F089832	AGG	MNMSIAHVKNVEESIVPKYYIQSGTLQLIYSTDQKPLDAAVAALWETNKFDTLDEHFYVDERGFKNYATALPDTKVYKTAKVVRRAGWSMEED
Ga0214923_1000196115	F040587	AGGAG	MIQWIGVLVALLGLAYTGVKDYQKGDIKLPKLPQKQLTKPVYPVQYCLMAYDPNLDKVFYLHDNGQWFDYAPPQRRYSTPTQP
Ga0214923_1000196132	F035281	GGAG	MKNILLLIALMFVGSVSYAGECVNGSCKVLRSRAVNVTKEVVQVPVTVTRRTVEATRNVGRKTAARIRSVVR
Ga0214923_1000196145	F056376	AGG	MNLIKCFSNVIGHKEARELVIDLNQMKSNDSEEFYIEYDKSVDYLIDNTYRVIGNVTQQDWKELNLDMDFMQVDLI
Ga0214923_1000196146	F041150	GGAGG	MGMGSFAVGSFVIEYKDLKGICPNEIKSIEQTKYFKDVGWNAIGRWLAWDDPDNLKEELYIAIEEDKSQPTIRLEKDIDSIVEDIFQEYEMLVTNLKKSFNKKTGLTLYFDHYDMENGDRYDNPGDKDGCIFCVDGMVQLTPAGQKFKDIITERRWTQFG
Ga0214923_100019615	F043359	AGGTGG	MEWFNSHKNPPKVGQKVYYFGSNIGIGIGNYSYDTDQHMTMKDGKRVDLCPHLFRNVIWGLVDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD
Ga0214923_100019617	F012108	AGAAGG	MLNIQVTVAEAIAIAHTASNDLHDRIVSALEMALGVNQRRVVTITGGMTLDNRIPCIKAIRLHTGWGLKESKEWTDFLVGGWKGDKWYPAATNTKQSITLKTPEAAENLLRDLAGLGCEGYLS