Scaffold Ga0214923_10001921

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001921
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28637
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F014827	Metagenome / Metatranscriptome	259	Y
F019450	Metagenome / Metatranscriptome	229	Y
F085343	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000192110	F002149	N/A	MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0214923_1000192112	F000635	GAGG	MTLTEIAQYAGEKVGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214923_1000192117	F003112	N/A	MKHIAMWLTNLSLRFLMTAQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVSLRYLEGKGRES
Ga0214923_1000192127	F001459	N/A	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNASAVMKKPEELADACGHARGYRACVATLESLASQKLNSAIPGYGDGSDEPVAD
Ga0214923_1000192130	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNLENDWRKNRKAIDSDLPGESWWLRNNNTSNPDNRGS
Ga0214923_1000192137	F019450	AGGAGG	MENIKHSYAVYNSVGQFQARFLTWRSALRWAIREGMEWTAVIRKEVGE
Ga0214923_100019214	F085343	GAG	MKAIITMTLTAMLMASVMAEDETEMNDFVGGVYRGGGNVHRAGSVIMTEDGLIFKSGSRFIYQNGQVCQHVGSTYIREDNSVVVRAGNAFVSNEGLTEKVGSCYIGPVNSFTAGSTTVRQGWASR