Scaffold Ga0214923_10001889

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001889
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28941
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018500	Metagenome / Metatranscriptome	234	Y
F032631	Metagenome	179	Y
F073089	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000188923	F032631	GAG	MSEEESEEEKKWYNNIFVIDLLIFIFSFAFLAIAGGIMYICYPPVMMAFQTS
Ga0214923_100018893	F073089	N/A	MSNNYALNKIIPIQESEPIQESIPVSTVSSENKLTKFILEGLGWTGSILVLCPYVMSLERDLDFILNTLGATGLLIVCIKSKQYQSIVINSAWIIGGIYKYYANN
Ga0214923_100018894	F018500	N/A	MNLNFNVTKYTGVMAFYAVLTYILFPAIAYFLFGKTLEAVGNGFIVGSVVSVVLWKVYGFGLVKGV