NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10001875

Scaffold Ga0214923_10001875


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10001875 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29052
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016772Metagenome / Metatranscriptome244Y
F032917Metagenome / Metatranscriptome178Y
F091274Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000187514F032917AGGAGMLRKFAILSLSSLLLVGCSTVTPDKVTDEIASYDASTPSGYDVQNSGFIGFLDDGKGIITPFGLLRYNTLVKTYKIRFKTYKGVDLDVNAGVEEYTDKKGNKLYIIDQQHLVYYAILNSWRKDGKEPDSIWDKAKELVK
Ga0214923_1000187516F016772N/AMRGLSNYMKNFLPFILVPFLLVGCATNNGGNGGSDVGGTTPKQAVENALPYIAPAVTLACTVVLEQAVSPEDKVEKAKMINHVATIVEALTNGSTPTPDQLQKALTDYLPVEKTHWTKYVVALKDIYAAQFTKLNGDAKLGVDVLNAIAKGCKTATDEYVD
Ga0214923_100018753F091274GGAVKYVSLSQAIKTAADLNTPSADYFDNFLPTYKRYHNRQNFRRAVCKIGSCLAVFVVACLCYSAINNSNKLDIDTASGDMSQHHTQHGKVVVFEGSVVDVTKFIKEHVKEKTETLNLKEYFNNDEVWGVYVPGEEKFRYYYQCLGKGKYTVFVFNE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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