Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10001846 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10001846 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29315
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29315

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015703	Metagenome / Metatranscriptome	252	Y
F036141	Metagenome / Metatranscriptome	170	Y
F041720	Metagenome	159	Y
F057907	Metagenome / Metatranscriptome	135	Y
F069774	Metagenome	123	Y
F078215	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000184617	F015703	N/A	VKEYFNGFLDSLDEELFEVKYDQYRNGRMVVEVEQNPGRKGWKPSGLMVTKARWWVYVFSPQAFIAVEVARLKKYLEINNEIELKEFVPHSNNPTKGYLLFPEDVSKLMSSELYDVVHNK
Ga0214923_1000184630	F041720	AGTAG	VSKTPRLFLSETQEAYLVWLLTPEDTRMPKTKKDWAELHDVHYNTLGVWEKNKVFKERWELGVKGMAQSPERTQALLDALYTKGVSGDVKSAELYLKATGFMQQIQTVNINNTSSVKELSDDELQAMILEISQKKQPNITISKIEEEE
Ga0214923_1000184631	F069774	GAGG	MRAVWGYYESSSIQSRSNSNMVRAFNTLKKELKRQQDALLMNHQDETTVSGGDAATFQFHYLLKADTTAMGASTTAAAAFDANTGAAGSLTPVATPFGTADVYFETRRDFYEPGRGF
Ga0214923_1000184636	F057907	AGGAG	MQCNDCSDNLKTQNDEKRGICFKCHVKGIKFGFKSVEYGQKAWNNSTIRETQRMYESMPGVEKVPARAELI
Ga0214923_1000184637	F036141	GAG	MEWLVPIVVAIIGGPLVVVVQKLRSENTSQHAEARALLHRVADKVDKVDDKLDNHITWHLTKTRRRKNENKEI
Ga0214923_100018466	F078215	AGGAG	MAFDPAIYEAARRSLFDQYAQQAALNAYQRYLAETRGQRPILQLEEAAFGRTATGGLGQVPKLTSSYGRRGLQGMNVRSGIYKQALENYAKQRERNLGYAREDLAGALRGYDLAATQAQQGFESGLADLERSKARQIAEDAQALLGLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10001846

Overview

Ecosystem & Geography

Associated Families

Sequences