Scaffold Ga0214923_10001792

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214923_10001792

Scaffold Ga0214923_10001792

Overview

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10001792 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	29898
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (20.45%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F050171	Metagenome / Metatranscriptome	145	Y
F071967	Metagenome / Metatranscriptome	121	Y
F083776	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000179214	F071967	N/A	VSNTSEALAICSEFADEYGIDVHDGETLVVYMSSKYINELKNMLERKNYKISTFQVYGSDALVNFTPKSRKNKDFDL
Ga0214923_1000179233	F017268	N/A	VNLDISLLFNIVLGALSFLGGWLFTRVFSLFDKQENLVKEINDKTFHDFIALRKEMELEGRKHQQEISDLALKISTTYVTKESFEAYFDRIEAKLDRNFDIIQNHLSRNNKN
Ga0214923_1000179234	F083776	N/A	VIVSDRDIDFFAKKLGLSPEKTFLLIQDPECLPEILNKISEDNINGIVDISFPVFAEITIIKYSKDLKYSFQEKEYISEAVGLKFYDLIGEPIIKKSIFEFKHDEDTAKSLLVFLGFFYKNLNKARRAYPSEKIYYNIAKNGFENSDKIHISEHLQDWIKVLRIIHNEVWF
Ga0214923_100017925	F050171	N/A	MGLFNHVKIEQDLPLNDELKALGVDFNQQEFQTKELEPNIMSTYIIRDNKLFELKIEGHWEDNPNYVVDNGKFREFFDKNKWVKDSEEEVFRDDFTGTFTFSCYVLGKTKESYDLFPDWKCVVIKGLLTEISLITPVEKNSSEKRIEADEIFQKQLDDHERKMRCPVYSFYFKYYVKTMNLIEWKLCKSINFIIRFLNWLQWKGIRKIIRFLSPR

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