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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023179 Open in IMG/M |
| Scaffold ID | Ga0214923_10001202 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37412 |
| Total Scaffold Genes | 67 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (52.24%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005584 | Metagenome | 395 | Y |
| F006138 | Metagenome / Metatranscriptome | 380 | Y |
| F014488 | Metagenome | 262 | Y |
| F019290 | Metagenome | 230 | Y |
| F088510 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214923_1000120229 | F014488 | AGGGGG | MIQKNQDPADSILASYTPDIAGEIDTIQDVVKERLAKMKLMNPGIGLDELARVAAQVVEETIQTEIQSPMLRTKRDDTLDEALLALATNRSPESLTSIARKYINPATGQPYTRAALSARLSELTHRTGLVLRVQRSQRVREIYKARALRVHQRRRQECPKWPKGAWEKGIKKTVKRGKK |
| Ga0214923_100012026 | F005584 | N/A | MAVGGSIPTSYLSTDLNYMITDLWQSVTGLSSTAVSASVTDLATSSELDVGGEIFRITQSLVVCASMVSAPIIGGLCTISGTERMIAGFTESTDGLSYTIDLAEITT |
| Ga0214923_1000120264 | F019290 | N/A | MEGQSFWGTTNIKVASAVAAFGAKLRSVDPVTRIIKDGQQQVTFWFISSGDGDIARREMEVNWSEMKSDQESPIRYVRAALENRETLLGLVKRAEPIRIIQVGGQTLLVPENASPERKKALLRHI |
| Ga0214923_1000120265 | F006138 | AGGAG | MAAVTIGQSGLVFGITSEGIGLVQSFSETRNVEKNEIRNNVGDVVGISYYNATTGYSLSVAVTGSYAVTAGAALAILANATTLGTTRIDSITINKGNDAFVTVDISATGYPNVS |
| Ga0214923_1000120266 | F088510 | GAG | MSADDHSVLISVREAVARMETRQAYILELLTDHKTKMDRIEQEAHSVKGRVWLVSTIVFGVLAAAWEIIKNRLLGH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |