Scaffold Ga0214923_10001093

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001093
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39229
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055287	Metagenome / Metatranscriptome	139	N
F066267	Metagenome / Metatranscriptome	127	N
F074541	Metagenome / Metatranscriptome	119	N
F080647	Metagenome / Metatranscriptome	115	N
F080651	Metagenome / Metatranscriptome	115	N
F095118	Metagenome / Metatranscriptome	105	N
F095163	Metagenome / Metatranscriptome	105	Y
F102109	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000109318	F102109	N/A	MNTPKSLIEIGIAYNQDKMQVMMAMQMNGKGLVDFVSSYPDHVAIVAFDYAIKSYPYGADTEKHEQGIRQGTTVIGEDVYPLSTFSNDEYRLELSNFGGEPQQDVAWYSFISDSDFMLIYSNKQWSIGYQEDARWLAIEGMTKEVVANANAMPFHDAFEYMLRMVHAIKVGAEWCNI
Ga0214923_1000109319	F095163	N/A	MIYANLLHNLATSKPRIAMSQIEAMCLEKAKQGEMYCWVFNPISDEDIEKLRTNGFKVEQQSDSSYRIDWSNPTNI
Ga0214923_1000109328	F095118	N/A	MPITCLTDLIFVPDGCTSTPSNKVSLATLPGFDLYQADYVSDAQQSSGYDVMTAAVERAGDKIVSDFRSFMDIKGRFNSVVDKGTIGFFDENKSNDAAKVGKYAGVEILVSDYPYLKFNLNSVSIFFAGAVTDNIYIIDIIQGTIIDTIPFTSVAGQITDVLINKSYPTNGQDLHLMIAVDAGLSAAFDTWINPTACASCTKGRRSRFSDLLFTRAVETSKTGSLTDTNLVGIGYTHGVSLNYSIECDDSTWLCQFSNRLRRAMLYASGVELMDEILFSDRLNNVTTINKEDANEKRSLYVQYYNTEMQTLLANLRLPNDRCYTCTPMVVNRVNIP
Ga0214923_100010933	F080651	N/A	MTTKDYIAKLNKAERAINGKRFVGLSSQIGRKQFKRVFVKGLDAEGAPIKPEYSTNPIYIGPNQTPEKSTAKFYEGGYKEFKRALGRGKMVLFRLFSQMYLQSIVNPELRISDTGFVIATGMTYNAGNPKGKVDGLLDKYGDAFKFSDAERKEFTERAEQIVVDLFK
Ga0214923_1000109342	F074541	N/A	MSYSCFDNLPVYSENVCEVNRLTGISAVAVIDNDYTFLDYTDAAEWTAAIAAGDVAIIKEIKANYPEAEEVTITNPRRGTPDILTKFNHTLSVMDANVDSSNDSFYETLNTIGKYKLAWFYYEEDEIRVVEQPVRCIAKPAKADENDVQQYVVTFGWQSAPNEFPVLYNAPVGIFE
Ga0214923_1000109350	F066267	N/A	MVVSKLTKWLVKYYPDAVLVALKPDAKNWKAGCEFMVDIEGHKYYKFRDSGDVPLVRYKEIQAVLIQLDNRLTSDELTSILQIARESVVAAIEGQSRKDRGKGLQQCLWAIQEAESRHKELGLHTDLIVELAALNLIRDDENPFEINETIQAEKLRLFKREFVNHDFFLSAGMNEFLPNAEQLADVWQRLWQASDQFQSKKKDILKSILGEIRSSIG
Ga0214923_1000109351	F080647	N/A	MITLLLTSLFIFGLWLSSAEGMILDDLRWRFISQFPELAKPVIDCPTCMASVYGTIAYWGDVIIANQPVDALTAIGWPIFVLCLAGLNGIILKLAKWS
Ga0214923_1000109353	F055287	N/A	MNWTGFIFKHWGIIALIAAFILGKQSCNYKAEAERHASNYDAIQQTASATARTLTLTNQQLREENQQLLDSLNIKGSRVEFVHRTKWRTKIDTFEVEVDRWHIETLPCPIQSFKLDTMCMKFAAIVHPDSPAVVTIETDYQLNVVGYWQRPGKWWGGKLWSAILGKKDAYVKISSPCFADSSVYLNKFSKAQ