Scaffold Ga0214923_10001019

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001019
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40916
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (34.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010602	Metagenome / Metatranscriptome	301	Y
F013277	Metagenome	272	Y
F064425	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000101917	F010602	AGG	MGIYDNGTIFGIKIYKLNDDSTNILFEQSYNEIMTDEQKRKAYLFYTQLNNKDDIYFSYYTQCSSTYDKGFFLIWYPMPLNLFLEKFGIGE
Ga0214923_1000101925	F064425	N/A	MESTIQIDAFSTNLHGSRILCQGPFQKSKYPPIMDSIQKLRDPFKKKILLTRNTFSLSKYQPLQYDATFQVKDNQDWTMILTYITYAPKPLLVIAEDIQIPDALWQKINRTTTFVNFSSGFVTNIRPYDAIFFAPVEEIGTQYTEFVFKILQSVYKATHSQKEHKEVLQELRVAGAGIAWTKYEEDTPGGSIYWYDPVTNNQSDGLSSKQMSELFSWLSDQFNRD
Ga0214923_1000101934	F013277	N/A	MQVYTPPKPAPLPDDFDEFYESLSKQEKELHLLAIEKLASSYFPQWSHMYRKWKKSKTEKTSSSTSSN