Scaffold Ga0214923_10000950

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000950
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42378
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (34.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F016772	Metagenome / Metatranscriptome	244	Y
F020649	Metagenome / Metatranscriptome	222	Y
F037078	Metagenome / Metatranscriptome	168	N
F080893	Metagenome / Metatranscriptome	114	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000095011	F010817	N/A	MLLRKKILKKFANILVLNFLLIGCATVTPNKIEDDKSSYDATTPKQYEKDNGGLISFIGDDALITSQARERYNNLIEMYRIKFKKEKAIELNKDSGIKPYKDNFGNELYLIDSEHLVYFGVLNSWLKEKVSQDNIIDKAIDKINN
Ga0214923_1000095012	F091423	AGAAG	MPTGIVQAFLSAVSGIFSAINNLFGAKNTKEMKERDQARKEVEYQSEIENAVKEKDLEKIRKHTSS
Ga0214923_1000095013	F016772	GGAG	MNKLNLIAVTLMSLIMVGCGTIDNRKDQPVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRIEKAKMINHVSTVVEALTVGQTPTPDQLQKALTDYLPAEKTHWAKYITAVKDIYAAQFVKLNGDAALAVKVLNAIAGGCKDATEEYVD
Ga0214923_1000095014	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEIYITGISKLVAVVSGIIFALTVKDASVTGGTVAQTNEAKDRTNGENI
Ga0214923_1000095033	F020649	N/A	MFSKILNWWNDLAYYNKFFFIVFTPAMLFTLWGMSDLYINYFDLLTKEDHMQFFLRIFFPISLATLITVLERRKRNKLIKDIKDYLDK
Ga0214923_1000095043	F080893	GGA	MNRTLKITNKNILEGEKANPQNCAIARAIKNKMKKNIEEVSVLPTQVILKMDNKMFIAPMPKEGTNFIKRFDRGLAVNPFELNLKFKKGYALV
Ga0214923_1000095049	F037078	N/A	MKNQINITIQPFGNTTAFLLEGNKSQIENFHNAMYNYSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGLKGGLLNLAKQKAQAKFDAFKEGRFLRTAISTDTFNLGTITAERPSDYCGAISSGRD