Scaffold Ga0214923_10000639

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000639
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51816
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (33.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F014486	Metagenome / Metatranscriptome	262	Y
F020649	Metagenome / Metatranscriptome	222	Y
F022820	Metagenome / Metatranscriptome	212	Y
F024954	Metagenome / Metatranscriptome	203	N
F034466	Metagenome / Metatranscriptome	174	Y
F047507	Metagenome / Metatranscriptome	149	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000063910	F007359	AGGA	MKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSLSDKLGKKFRGAKGGLKAVVMNRVMNTINNIPSEHFVKTAQVQDFYSIGQVSAEKLDNDS
Ga0214923_1000063914	F022820	N/A	MKSENRLSKILEKRILKDEDPKLISDIDKFLNNLETVFVKWAKAHPNWKEHEE
Ga0214923_1000063924	F014486	N/A	MNIEKLLNENLESFFPWNDFDNPPLDTNKSFVQKERELDEEFEGWRASM
Ga0214923_1000063927	F024954	N/A	MKNNIESLQVGKYYQIENHIGVCELYNNKKQLRKITSVGVVTQFCDEMQEVEMTPELLKECEDRKNGVMNFIGSFNESSKYKGD
Ga0214923_1000063942	F080893	N/A	MNQKLKITNKNILEGEKANPQNCAIARAIKSKMKNKIQEVSVLPTQVILKIDKKMFVAEMPKQGTNFIKRFDRGLAVNPFEIKLKFKKGYALI
Ga0214923_1000063948	F047507	N/A	MFKKKNKFWNWKTKTLLVGVTLIVSWIACLKIGFELKKYSNITNLPNSCFVDAMIYASQCNLLLTTNTDIWNTVYGFTFYYKDDKESMLGHAVCIFEYKNNLWIYDPNWGTSPICQIGDKKQYRQKIRLYINEHYPIMVVEDFMLNDWTYVQKIKKNKMNKSYQEVSIHLDEDKKE
Ga0214923_1000063950	F034466	N/A	MDNQLRNILLNNYERSLPSKRNTEDFINNFHQYRAKKKAQEKTYYSLALILLLIVTALGSIAIKETTNKLDIQTAAGQVQK
Ga0214923_1000063953	F020649	N/A	MLSKIKNWWDNLKYYDKVFFITFIPATLFTLWGMSDLYINYFDELTKEDHMQFFLRIFFPISLATLITVLERNKRQKLIKDIKDYLDK
Ga0214923_1000063968	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDGVENYVLGISKLVAVVSGIIFALTVKDAAVTGGTVAQTTEAKDRTNGENI
Ga0214923_1000063969	F014229	GGAG	MNKLQLVAVALLSVFLGACATTQTGKVDVETSVSNALPYVKPAVVLACTVVLDQALSPSDRVEKAKMINHVASIVEGLTVGTAPTPDQLQKALTDYLPIEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE
Ga0214923_1000063971	F010817	AGGAG	LKKFASVLVLNLFLVSCATVTPNKIEDDKSSYDATTPKQYEKDNGGLISFIGDDALITSQARERYNNLISMYKIKFKKEKAIELKEDSGIKPYKDNFNNNLYLIDSEHLVYFGVLNSWLKEKVPQDNIIDKTIDKINN