Scaffold Ga0214923_10000502

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000502
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59137
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (89.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F024770	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000050220	F024770	AGGAG	MSVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPTGGVDVYLGGDGVTTTSYGFLLKADTSFSVELQGGEKLYAVVASGTQTVNIIRQGT
Ga0214923_100005028	F008607	AGTAGG	MADAIYTKVQDFMTDTVSFYARSSVDKYNKPTYSAAVTTATGRLIYDTVKAVDAQGIEVTNIGRFVTYGPQTAITTNHKMVVGAETFNINAVDNIADENGAHHTVIKFGR
Ga0214923_1000050286	F011482	GGAG	MRRLDDLTIEVKQMNLNISQTYVRKDVYDADSDRITQAMEHITDRLGKMESRSEWVIRTVGAMFIATVVGASIYVGQIIGF
Ga0214923_1000050291	F006261	GAGG	MAVVSSAYTTTEPVQITNAGIWSFTAPENPSIRVTSTKVQQPLNLSIVETYGVFKPLGGSKTVVVSSSLYGIDGTYEFTTKGTAEWNDLYPVLTYQGTLHVHDPLGRQKYVRFVDRTWTELGPVASLIRNIKVTYYEVEAP