Scaffold Ga0214923_10000487

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000487
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60358
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (72.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F009680	Metagenome / Metatranscriptome	314	Y
F012108	Metagenome / Metatranscriptome	283	Y
F040587	Metagenome	161	Y
F041150	Metagenome / Metatranscriptome	160	Y
F042870	Metagenome / Metatranscriptome	157	Y
F043359	Metagenome / Metatranscriptome	156	Y
F088817	Metagenome / Metatranscriptome	109	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000487117	F042870	GGA	MTNQESESDNLPDSKIPWWDNHYEDTYSEEVEDGYPYDMGTKVQE
Ga0214923_1000048745	F088817	AGGAG	MNGYELIAEFEKLIKDMIVVPNHWLPEDFRDNRTDSVSLADLERKCDAREIGETDHQIEKREKDRRIAAYAVMIEHGQEIEYIMK
Ga0214923_1000048748	F043359	GGA	MLLILKERDKMEWNNSHKNPPEAGQKIYYFGPNIGIGIGTYRYEEHSIKHLGKVIELCPHVFYNVCFGVVDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD
Ga0214923_1000048751	F012108	GGAGG	MIKVEMSVREALNMVSNGCNLDMYEKIVCALEVALGVNQRRVVTITGGLTLDNRIHSIKAIRQHTGWGLKEAKDWSDYLVGGWHNDRFIPAKSGAKQSITLKTPEAAEGLLRDLVGLGCEGYLS
Ga0214923_1000048755	F000325	GGAG	MKVAEGNDKLGKGCVVVSRPVGDTCPSDCDYLGNGCYAEQTEKIYPGVRPAGMQNLVTEKNKIRAMILDANRRNKSIRVHERGDFFLNGELDLEYVSNWTWACESILADGESLPDMWFYTHIYDSRLVSLEKYMAVYASVHDDNDMNEAKSQGFKLFAWCDSDMKVAPKRPKHKAKADVWRASLPKLVVLNGEKFITCPEIRRGRAIITCTGTKDSISCDMCVKGLANVLFPAH
Ga0214923_1000048757	F089832	AGG	MNMSIAHATNVVEDIVAKYYIQSGTLQLIYSTNQKPLDAAVAALWETNKFDTLDEHFYVDERGFKDYATALPDTKVYKTTKVVRKAGWSLEEE
Ga0214923_1000048758	F040587	AGGAG	MIQWIGVLVALLGLAYTGVKDYQKGDIKLPKLPQKQLTKPTFPVQYCLMAYDPNLDKVFYLHDNGIWYDYAPPQRRYSTPTQPQ
Ga0214923_100004876	F009680	N/A	MSENIIHFWQSLATASIGIIVTMMGFWVAIGKNMATKSEVAHMIETQSPYLHDRQFIMERLNINKETQAAFANALQRNTEVMNELKIQMATLTKTLEALEERIER
Ga0214923_1000048798	F041150	AGGAG	MGMGSFAVGSFVIEYKDLKKICPDEIKTIEQAKYFKDIGWGSIAQWLSWDDPDNLKDELYSCVEEDPSKPTIRLELSEDQIVEDIFNDYDKLITNLKNSFNKKTGLNLYFDNYDSEYGDRYDNPGDKDGCIFCVDGMVQLTPAGEKFKDIITERKWTQFG