NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000268

Scaffold Ga0214923_10000268


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000268 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79621
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (63.64%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Associated Families17

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F003688Metagenome / Metatranscriptome473Y
F004092Metagenome / Metatranscriptome453Y
F004405Metagenome / Metatranscriptome439Y
F004475Metagenome / Metatranscriptome436Y
F006885Metagenome / Metatranscriptome362Y
F010599Metagenome / Metatranscriptome301Y
F017788Metagenome / Metatranscriptome238Y
F020851Metagenome / Metatranscriptome221Y
F022813Metagenome212N
F028423Metagenome / Metatranscriptome191Y
F034566Metagenome174Y
F045545Metagenome / Metatranscriptome152Y
F054581Metagenome139Y
F082150Metagenome / Metatranscriptome113Y
F086583Metagenome110N
F098668Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000026810F017788GAGGMKKIIITFLLLTLLIPNTSAVAATKSLKTKENKASCKNIKTKYELEIMSKWSDGLASDQEVLKEIDLNIEILSRGQKLTTGKIKTVIRDWIKAEKNTKDALIDKNVEAITAAMNLKISSISNFDKLCKSIEK
Ga0214923_1000026814F004475GAGGMTNWTEELTDKQKKQVWSFIVFTVKEIREQIAQDILATADIWMAKGYLKSRRTSKAFLVSAAIARGENEKISWQ
Ga0214923_100002682F098668N/AMKNIANLIAASGCFNLDEALRAVSELHIPEGTLVHRCQEDKKPWPCQTIKAIKKQLTK
Ga0214923_1000026826F010599N/AMQTGIIVFFATLSLSFGIAYWATFEKLKKSQFALTKLFIENEGLKEAISNVNLNIDSSDQGLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSKELNNKGLNSYSEKLLALLPEEDFKINEK
Ga0214923_1000026828F045545GGAGGVIKQFIMFFICKIKTHNLVEAGACPFTGKNYNACLRCGITIVK
Ga0214923_1000026829F003688N/AMYTDLMKHAVHSIPAPKNFGVQIIDNDHFLTIKLDEKKFLHMVHDEKILALQYVVKLKKALENCGAIVLVTREAIK
Ga0214923_1000026836F006885N/AMEYLLIIGLTSFTVWSIIKISNKKRIKFLSKIKYRQSNIYEMAKEIIPQKMFEKPKVITQSQKHIQKNMLKVVITEGKAYWVLDNVFYTANAIGGRVDENTIKPLDIENMPTKELNKMLSILDDLRQGMEKNDSGSTGNV
Ga0214923_1000026837F028423AGTAGGMENLEKNELIQLITFYKQKLSDTELESLKLQIEINKLNSMILGLTKETTKKSK
Ga0214923_100002685F020851AGGMKDLVDLAISMTEIDTGIKLSLEERKAMIERILIKLETSN
Ga0214923_1000026869F000264AGGMTFLKEKLTNNTMTAKLYTSEAWLRKRFVMDKKSPQEIAKECGTSVETVYVYLAKFGLRKSKR
Ga0214923_100002687F054581AGGAMCPYCNNVLIPILYGYADKKYLDMHKKGLIFLVSTTFHTKDSPSSYCKKCNESFYIKLNNKF
Ga0214923_1000026876F004092AGGMLESKFTVYPGKWPCKTCQEIVTTLRYWKETGDATWMCTQKHISKVGLIPPKKRKKDFIN
Ga0214923_100002688F034566N/AMSIKVKTLIWVQAFLILILSTALLFVAGDLKHTNQMAFNQSNYCIRYTSDIIAKSSLDLIREQDAHDRDVDKANTVIIDIVNRYNTIVARYNKGTGGYNYDPLNPYSYKIMRTVP
Ga0214923_1000026888F086583GGCGGMADSGIKKVIIKKALLPAINSDSVGYIFRYRIVSDDKNRTSQWSPINIVEDDSIASVTGALQITETITTVVWDDELNRPKYDIFVGFDNTTPIYHGTSPIHTYSFINTGVTNVRVIIQVESSSKVLNAGLEIYDSGIEVLV
Ga0214923_1000026890F082150GGAGGMGYADSQNWAKEMGRNLANEAGNVVSNAIDAAKTAEAIGIVGAAEVERRGGVNAQGYFNDVPAYQQLTANERASVTLSNGHIDSMAMLAILNKKEAEYFGRSLDSGVIKAPAPESANITATPAVPEITPAMRMFSVETAPVKTAPIDTVLFDEEAVPIEVMADLIFEDIGGQELLSITRSDIVNGQKISYQPIKNLSAIQQQYNPNNILGLQKTSDKFFAGFAIKLENKIPEEGNGANGSNVYLNELGDLVIEFINLNNDEQVETQITTSGTIYEADLGEYAS
Ga0214923_1000026897F022813N/AMTILTDTGFPPTFLNRYVLSELAFYNLIADSDLVNPTPMVPAQFPTNIEDLYNDSIQIRQTESPVLIVYDRLMRFRPTPFYAHKREQLIYFIYSTDVGKLIDSVRVISNALDREDASAQDINSYSLANPILNNQGNVSIPYNIFFHNTRVYQADESRDVAELASARTLFVNKLIIEYDYHIKTESDSRYT
Ga0214923_1000026899F004405GGAGMDSCEVTDFMFPMKADIYFPILEQGDYGQPKKDWVYDRTIICNATPVGGLGTEDIKPEAFLQYENKLIARTKNDPRLSSNNANNATTNILVTNVRDANDNIIYKETAGPRSGRGTIYEIATVEPFTGPFGSTEYYKMLWRRTENQTVGD
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