Scaffold Ga0214923_10000258

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000258
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81337
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 110 (65.87%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y
F040587	Metagenome	161	Y
F041150	Metagenome / Metatranscriptome	160	Y
F042870	Metagenome / Metatranscriptome	157	Y
F056376	Metagenome / Metatranscriptome	137	Y
F060726	Metagenome / Metatranscriptome	132	Y
F085623	Metagenome / Metatranscriptome	111	Y
F088817	Metagenome / Metatranscriptome	109	Y
F089832	Metagenome	108	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000258104	F040587	AGG	MIQWIGVLIAIFGLAYNGVKDYQKGDIKLPKLPQKQVLTKPVYPIQYCVMAYDPNLDKVFYRHEDGIWREFAPTQKRIGEYYR
Ga0214923_10000258107	F089832	AGGA	MKYYIKCGTLELIYSTSKKPLEAAVDALWETNKFDVLDEHFYVDERGFKDYVSALPDTKVYKSTKVIEKAGWSLEK
Ga0214923_10000258108	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDALPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALSQGFKKFAWCDSDMKIAPKRPKNKAKADAWRKALPKLVVLNDTKFVVCPEIRRGRSVITCTGTKDSISCDLCVRGLANVLFPAH
Ga0214923_10000258111	F012108	AGGA	MIKLELTVREAMNLATSWAYNNDVELYHKIVNAFEMELGVNQNRTVTITGGMTLDNRIACIKAIRLHTGWGLKESKDWTDCLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLVGLGCEGYLS
Ga0214923_10000258118	F104766	AGG	MEWISFFERQPEDGQGIWYYGQHIGVWVGRYSYCANDPFSPHRIFCDEAPGVVDRMDAPWWMPDDGKMVRPHKPERIIPKDYPSG
Ga0214923_10000258123	F088817	AGGAG	MNGYELMAEFEKLIKDMIMVPNHWLPEDFRDNRTDSVLLADLERKCDAREIGETDHQIEKREKDKRIALYAAQISSGQEITYLMK
Ga0214923_1000025820	F041150	GGAG	MGMGSFAVGSFVIEYKDLKKICPDEIKAIEKAKYFKDIGWGNIGKWLSWDDSDYVIDAIYEIVVDEQIAENVFETYDKLVTSLKNAFNQKTGLSLYFDHYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGEKFKDIISERKWTQYG
Ga0214923_1000025835	F042870	GGAG	MTTDSDSVLPDSKIPWWDNDYEGVYSDDPENGYPYDMGTKVQE
Ga0214923_1000025856	F056376	GGAG	MMILIKCFSTVIGHKEAQELVTDLNQMKSAQSEDFYIEYDRSKDYYKDDTYIVVGNVTENDWDELNLDMDFMEVGDI
Ga0214923_1000025876	F085623	GGA	MTKIRTLNLDYDLIEIHYNPNLKNKPYLIRIFNYNNDYPEELRLDEKDMENLYKILKEHKLI
Ga0214923_1000025879	F060726	GAGG	MYKNVLLTDKEIALIKRIIGDTLHEKIVPEAKNLTIILNRLRQIQPSIQHNQFFNYGK
Ga0214923_1000025884	F035281	N/A	MDATELYQEKIMIKFVMAVCFILSGSFVVAGECASNSCTLRSRVVNVTQEVVSVPVTVTRRTVEATRNVGRKTVSRVRNIVR
Ga0214923_1000025886	F036210	GAGG	MKTKVINQINRQEIQRKYIDQILGELDFMQIKDRLRDYLSKEKDKESNYALESEIRKEAPDILVDNWEDFDKPATLTKEYQHHA