Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10000112 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10000112 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	118245
Total Scaffold Genes	148 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (36.49%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

118245

Total Scaffold Genes

148 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (36.49%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010817	Metagenome / Metatranscriptome	298	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016772	Metagenome / Metatranscriptome	244	Y
F037078	Metagenome / Metatranscriptome	168	N
F043788	Metagenome / Metatranscriptome	155	Y
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000112113	F010817	AGGAG	LKKFASVLALNLLFVGCATVTPDKIQDDTASYDASTPSQYNQDNGGVIALLENGTIITTQAKDRYNKLIEMYKVKFKKEKAIELVENAGIQPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPQDSVIDKTIDRINN
Ga0214923_10000112115	F016772	AGAAGG	MNKLNLIAVALMGIFMVGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRIEKARMINHIATIVESLTIGQTPTPDQLQKALTDYLPVEKTHWAKYVIAVKDIYAAQFTKLNGDAALAVKVLNAIAAGCKDATAGYVE
Ga0214923_10000112127	F080893	N/A	MKQETFKITNKNILEGEKANPQNCAIARAIKSKMKKKIKSVSVLPSQVILEIDKKMFIADMPNIGTNFIKRFDRGQAVNSFQLNLKFKKGYALV
Ga0214923_10000112130	F037078	AGGA	MKNQITITTQPFGNTTAFLLEGDKKQIETFHNAMYNYSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGLKGGLLNLAKQKAQAKFDAFKEGRFLRTAISTDTFNLGSITAEKPSDYCGAISSGRD
Ga0214923_10000112143	F014486	AGGAG	VNIEKLLNENLETFFPWSDNDNPPLDTNKNFVQKQKEIDEEFEGWRALM
Ga0214923_1000011274	F043788	GAGG	MASLDDIYDMVQKLDDSNIEYLLITIQKGKKTGKADVFYCLKDKNSMRILTHGLNQFSKEIDRLEDEGKFE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10000112

Overview

Ecosystem & Geography

Associated Families

Sequences