Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10000045 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10000045 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	160589
Total Scaffold Genes	212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (17.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

160589

Total Scaffold Genes

212 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (17.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016038	Metagenome / Metatranscriptome	250	Y
F016772	Metagenome / Metatranscriptome	244	Y
F032917	Metagenome / Metatranscriptome	178	Y
F052416	Metagenome / Metatranscriptome	142	Y
F053824	Metagenome / Metatranscriptome	140	Y
F065460	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000045108	F052416	N/A	MDFIEPRIIASPISGQPVKPRLMTFIRGDKEIVEAHYIDPASGTFIRKGIVSVKDVPKKDTK
Ga0214923_10000045170	F016772	N/A	MKNILPFILIPFLVAGCVTTGPDNKVDPAQTVENALPYIAPAVTLTCTVVLDQAVSEGDRVEKAKMIYHVADIVEGLTKGAAPTPDQLQKALTDYLPQDKTHWVKYVVAIKDLYATQFAKVNGNTKLAVDVLNAIAKGCKDATESYVSN
Ga0214923_10000045172	F032917	AGGA	MLKKFAIFSLSSLLLCACTTVTPDKVKDEIASYDASTPTGYDVQNSGFIGFLDDGRGIITPFGLLRYNTLVKTYKIRFKTFKGVDLNENDGTTEFTDKKGNKLYIIDQQHLVYYAVLNSWRKDGKEPDSIWDKAKDLVK
Ga0214923_10000045182	F053824	N/A	MRGGKLMNIDYSNKDLRPKTFFAKIERSRNGSFTVKRVKVLEQSNQYARTIRRTDARDFTRAVNRAGALNVA
Ga0214923_1000004541	F016038	N/A	MAANIDLLPTQKSLIDLSELPKNSFNSIFYGFSLKQLLDDVILVKFVDETEDGTNIIRNGIVVPVNVDTKAWRIGEVILAGPNTKHAKPGDYVCFPNNLGIPVANISVDGYGTLKKGIFLNEQRIFGICSVINDNNSVAAHTTKKRKNSE
Ga0214923_1000004561	F065460	N/A	VNKFNKKLESLAENFKSIKHVKREFYPKNFNLSEDFVNAFRKEYKRLIDEGIEPKKALIKLNKALLFHTN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10000045

Overview

Ecosystem & Geography

Associated Families

Sequences