NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255772_10255762

Scaffold Ga0255772_10255762


Overview

Basic Information
Taxon OID3300023176 Open in IMG/M
Scaffold IDGa0255772_10255762 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)955
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005467Metagenome / Metatranscriptome400Y
F010653Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0255772_102557621F010653N/AMLLRTALLYMIMTVCALAFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQRAIVYEEIQHIRSEIQRVVDQLIAHDQAQHPQP
Ga0255772_102557622F005467N/AMSKQQYYYVMCEKGTLTHRAYVQMDPESADILHDSLESRYDLVQVCEVPEGEIEPDLLIDPAP

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