Scaffold Ga0255772_10128432

Overview

Basic Information

• Taxon OID: 3300023176
• Scaffold ID: Ga0255772_10128432
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1543
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F019728	Metagenome	228	Y
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255772_101284321	F052274	GGAG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWD
Ga0255772_101284323	F019728	AGGAGG	MITKKELEKNGWTVIPNGAWFGIDYAESHKVNVLDMLTDVLDLDTDVEGYNFVVCAYKKEETYG
Ga0255772_101284324	F003976	GGAGG	MSRLYNDYYFEKLDILDTLDKLDMSVRLLNVWVNEPMGLENAKYLLEKNANQKFNWFSRDMVKELVEEEELX