Scaffold Ga0214921_10211520

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10211520
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1195
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_102115202	F011756	AGGTGG	VSEPRYLSGDEFALSGGYEELVNCNECDVEFDQVEYRSDTCSECEDKRVMREKESK
Ga0214921_102115203	F011646	AGGAG	MSNVLELRNGAVKRIIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIYVQEWITDDEDAREVSPQIEITSIVLSTIADCMERWSN
Ga0214921_102115204	F018703	AGGTGG	LSNIERRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRAYLEEEIEADEKMGKKWFDITGRTKPTDSRSR
Ga0214921_102115205	F022400	AGG	MKRTVIESSHKITLRLVSGGKEESGSAYSPFGPVRAGLITTRPTNEVVQLTELLNCLEKKITEANIKSLEVLNTFLSDISRLAEPGTSSLNITITNAIQK