Scaffold Ga0214921_10183004

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10183004
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1345
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F013891	Metagenome / Metatranscriptome	267	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101830042	F077310	N/A	MSIDANSVIIVIVASILSGMGTAMINEIKESKREKNRQIEREQDMLKMELKDLEIKLYKLEKDLAEWRDKYYAAVQELIEVKSELENCLIELSHIVHHED
Ga0214921_101830043	F000671	GAGG	MEKILCYSCNKTKNKLNVRKSILIPINLLMCETCITSKFEPRWVVILAGRQLGSDSVKEFIIKKRYCGNDIAASELLV
Ga0214921_101830045	F013891	N/A	SLQMDIARYPEFLAIRLYEDNFLKYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN