Scaffold Ga0214921_10127277

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10127277
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1808
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F034827	Metagenome / Metatranscriptome	173	Y
F078229	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101272772	F034827	N/A	MKYNITSQDKEALTEFDQIKEGEVFSFFTPESTDRGNHAIYMKIRVPNTTSVNIVDLGDGKAYDFSAKKRNSINDPDEKQGNRVYKLNAKVNIVVL
Ga0214921_101272773	F078229	N/A	MSNIKYTYYIEQDKDRDGNYIQSFSIYKTPVIKIIKLKTFKKLSDANDFLEKYESN
Ga0214921_101272774	F030670	GAG	MKVIRYIKELEDEFGKTLEKWAVYEEIQKPNYPHANFIDAKILKTFPSPYHARNWMENDGKTN
Ga0214921_101272776	F027756	N/A	MKLKDLIDRKILYLNFPINRYAVQEGKVTEISPSEKCIKINTDWHLISNIRIIELFSEKERPTLGFN