Scaffold Ga0214921_10127037

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10127037
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1811
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101270372	F006182	AGG	MDVPDDVIPHYDVAGKLYALEFNDILYMLQMCIVAEAGAGGCDVIHQYDEMENHSITNVRYDDAEFGEITSG
Ga0214921_101270375	F010618	GAGG	MSLKELIAKLQQLEKKYQQYSEDTEVVIAVHSENDFNPEVQIDYIDEVVHKALDTHSGYICRIVLCGEYYQQED
Ga0214921_101270376	F002406	AGGA	MENLKWIRAMADRLRDELSKEYDDETKDLIIRAFMQGLFQQPEIVEELKSSSLIESDYFEDAE