Basic Information | |
---|---|
Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10127037 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1811 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002406 | Metagenome | 562 | Y |
F006182 | Metagenome | 379 | Y |
F010618 | Metagenome | 301 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_101270372 | F006182 | AGG | MDVPDDVIPHYDVAGKLYALEFNDILYMLQMCIVAEAGAGGCDVIHQYDEMENHSITNVRYDDAEFGEITSG |
Ga0214921_101270375 | F010618 | GAGG | MSLKELIAKLQQLEKKYQQYSEDTEVVIAVHSENDFNPEVQIDYIDEVVHKALDTHSGYICRIVLCGEYYQQED |
Ga0214921_101270376 | F002406 | AGGA | MENLKWIRAMADRLRDELSKEYDDETKDLIIRAFMQGLFQQPEIVEELKSSSLIESDYFEDAE |
⦗Top⦘ |