NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10121557

Scaffold Ga0214921_10121557


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10121557 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1874
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052598Metagenome142N
F058151Metagenome / Metatranscriptome135Y
F099316Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101215572F099316AGGAMWRIRKIGDENGYIVRNKELANQLLGQFTSKGEVWEMVEITEYELGDPMEQ
Ga0214921_101215573F058151GGAGMWRKREIMELENKVTLSTLVDNVPTDVSGKWVKKEDLYPFASAVADFVLSEVETKLNDPT
Ga0214921_101215574F052598GAGMIPLFKMTVTDEFNCEFVYVTENKEDLLDRVALWLAQLDNTPIYNLNIEVNPK

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