Scaffold Ga0214921_10113590

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10113590
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1976
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101135901	F002826	N/A	MQVEAKDRLKWAREILLIARNKLVIERDRATHGHAIDMIQIITMVDAASLVCKEVAGEE
Ga0214921_101135906	F020665	AGGAGG	MKKKTRDIKLVKVEEFKAAKIVVEVDDELFEAMAQAGRKHIAKDKVACFSYALNMALLELCEEVR
Ga0214921_101135907	F022371	AGGAG	MLCLLELKDIVWVISWFILYSWLILSIIYCAGYIILKLIDFIKEELEL
Ga0214921_101135908	F021063	GGTGG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRLLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPT