NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10106773

Scaffold Ga0214921_10106773


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10106773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2074
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F027179Metagenome195Y
F054036Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101067731F054036GAGGMKLDFKVSGTINVPEDAIKHYDVAGKLYALEFNDTMYMLQVCLVAENSDGEYEMIHQYDEMLSNDISDLRYDEAEFVEG
Ga0214921_101067734F002406N/AMENLKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDNDETDLHG
Ga0214921_101067735F027179GAGGMKLIYMADGLFLYEKENSYVVMDQNDNVLKEFKTATSCSRYILKTLLSRRAAERYAIEEINKSKV

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