Scaffold Ga0214921_10106773

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10106773
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2074
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F027179	Metagenome	195	Y
F054036	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101067731	F054036	GAGG	MKLDFKVSGTINVPEDAIKHYDVAGKLYALEFNDTMYMLQVCLVAENSDGEYEMIHQYDEMLSNDISDLRYDEAEFVEG
Ga0214921_101067734	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDNDETDLHG
Ga0214921_101067735	F027179	GAGG	MKLIYMADGLFLYEKENSYVVMDQNDNVLKEFKTATSCSRYILKTLLSRRAAERYAIEEINKSKV