Scaffold Ga0214921_10103345

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10103345
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020649	Metagenome / Metatranscriptome	222	Y
F034466	Metagenome / Metatranscriptome	174	Y
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101033452	F034466	GGA	MRNLLLSNYEKSLPSKRDTEAFISNFHQYRAKKKAQEKTHYALIFACVLILSMIGSIIAKQTKNNLDIQTASGIEKCNTQVMEK
Ga0214921_101033454	F093196	N/A	MNKIPFIVGVCIAISIFYTVYSPHASLVKQQIDNYGMDFEYVTDEGSCFTQRAEPIGHDSHKYILSLGKPAKPTNAEEPLYVMVGYTMKQIRLKNKSNVFQSQLSNTLYDKNINYSSSAISNGS
Ga0214921_101033456	F020649	N/A	MLLKIKNWWANLKSYDKFFFITFVPAILFTLWGLSDLYINYFDLLSKEDHLQFFLRVFFPVSIATFITVLEHNKRKKLIKDIKTYLND