Scaffold Ga0214921_10102769

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10102769
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2136
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101027692	F000263	AGG	MNAEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQELTLAQETEEESGEAMDSMERKYWEGVLDTYGELYKLTYDLSFAIGARNEA
Ga0214921_101027694	F000441	AGGA	MSDEYIDDQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMQTIDQ
Ga0214921_101027695	F000852	N/A	LKGDNQMATKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEVPAGKAK
Ga0214921_101027696	F031497	GAGG	MSKTPEIKVAQSLVNLTEDHWFNPSIFGRYLAEQPMYTIDRIMEMVVSIISEQSKIHGVHGFTSEGLMLAVELNECIKVYQEDNHFNSLKLPARSFTVSKREEPKTHTFGWRSEELDPFN